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Tuesday, April 21, 2015

Chemistry Literature Feature, Vol. IX

Have you seen a good paper lately? Written one? Send it in and have it featured here! treetownchem@gmail.com

Overheard at Michigan: Snapchat Edition
These results not sponsored by Dell, but I can't
really understand why.
Once again, it's time to look at six cool papers from five cool fields and also organic chemistry! In this ninth episode of the Chemistry Literature Feature, we'll take a look at a paper that pulls the old bait-and-switch on drug-resistant cancers, a one-step experimental verification of some really old kinetics thinking, and a new look at how frustrated Lewis pairs catalyze hydrogen activation. But first, at your left, a simulation gone horribly wrong!

Monday, April 6, 2015

Crystals in Chemistry: Wait, What?

This is the first in a multi-part post about crystals in chemistry. Stay tuned for more!

I have been spending a lot of time on crystallizations lately. (Read: I have been a very sad chemist lately.) Last week, as I was hanging dejectedly out of the glove box like some shamed medieval peasant, peering into impossibly dark solutions looking for the smallest sign of a crystal, it occurred to me that these little nuggets of perfection might be the kind of thing that people want to read about.

What are crystals? Why do chemists care about them so much? Why am I trying so hard to make one? How are they made, and what do we do with them after we have them? For all this and more, read on.

Crystals - Not (Exactly) Magic
Whether you know it or not, you've seen a crystal in your lifetime. The salt and sugar in your kitchen, gemstones in jewelry, and the tip of Gandalf's staff are all crystalline materials. But not all crystals are shiny, pretty things. The solar cell in your high school calculator was probably a crystal. Metals, drugs, and all kinds of other things can form crystals.

Let's start with a definition. A crystal is a collection of atoms, ions, or molecules that comes together
The crystal structure of sodium chloride, called the "rock salt"
structure (rather appropriately).
to form a regular, repeating pattern in three-dimensional space. Crystals are most frequently made out of small species like atoms or molecules, such as is the case with diamonds (crystalline carbon). However, some fields of science have labored painstakingly to produce crystals of much larger species like proteins and an entire ribosome.

Sodium chloride, table salt, has a fairly simple crystal structure, shown here at the right. The red cube shows the smallest repeating unit of the crystal, called the unit cell. The entire crystal, no matter how big it gets, is just many copies of this tiny unit cell stacked over and over and over again in three dimensions.

Crystals form because they force their constituent atoms or molecules to pack in as closely and as tightly as possible to one another. The extended network of bonds gives the crystal extraordinary stability. We'll talk more about crystal formation in another installment.

Red crystals of an iron phenanthroline complex prepared
by my labmate Kayla. Crystals containing transition metals
like iron are often brightly colored.
Damn It, Entropy! This Is Why We Can't Have Nice Things!
Of course, the packing isn't always 100% perfect. By the second law of thermodynamics, processes that increase entropy are favored. Crystals, with their regular packing and rigid bonds, are not very entropic, so defects form readily and increase the crystal's overall entropy.

There are many different ways a crystal can be imperfect or defective. Atoms or groups of atoms can switch places, get swapped out for other atoms, or be missing entirely. Another defect that can appear in crystals is the grain boundary. A grain boundary is a line usually formed when two crystals fuse together to become part of the same particle, or when a crystal changes orientation during growth.

This means that a single particle of a given material can be composed of more than one grain, also called a crystalline domain. In the case where each particle of a material is composed of only one crystalline domain, we call the material a single crystal. In the other case, where each particle of a material is composed of several crystalline domains all stuck together, we call the material polycrystalline. If a material has totally random ordering at the molecular level, it is called amorphous

Needle-like crystals of tetrabutylammonium
hexafluorophosphate. These crystals have poor clarity and
are probably polycrystalline - lots of grain boundaries.
One Grain or Many?
Outside of the analytical world, both single crystalline and polycrystalline materials have important uses. Generally speaking, single crystalline materials are more conductive of heat and electricity because heat and electricity both have a hard time transferring through grain boundaries. That's why solar cells are often made from highly crystalline silicon wafers.

Polycrystalline materials, on the other hand, tend to respond better to stress and strain than single crystals. The grain boundaries stop the spread of dislocations and other signs of stress that eventually end in material failure. The bones in your body and metal support beams for buildings are both polycrystalline; a single crystalline material would be far too brittle.

Get Ready to Go Deeper...
We've only scratched the surface of the properties of crystals and what they can do for scientists. Next time, we'll talk about techniques used by lab workers for crystal growth, both in research and in industry.

Wednesday, April 1, 2015

13 Outright LIES Scientists Are Telling the Public

APRIL FOOLS! This blog still has integrity!

But, while I'm posting, let me publicly thank those of you who filled out the feedback survey I posted a few weeks ago. I really appreciate hearing back from the readership about how the blog is going and thanks for your time.

In other news, I'm focusing on my thesis work hardcore this semester, but I'm not dead! I've (We've?) got a few interesting things moving (slowly) through the pipeline, coming soon to a social media feed near you.

So, stay tuned, and as always, thanks for reading and making this a fun adventure.